PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G335600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 690aa    MW: 77136.3 Da    PI: 5.0877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G335600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.2e-14482528455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Aqcoe2G335600.1.p 482 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 528
                        7999**********************8.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-589191IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625478527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.53E-18480538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-18482538IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11482527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.38E-15482532No hitNo description
SMARTSM003531.9E-17484533IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MATQQGGRLQ QMLQSAVQSV QWTYSLFWQV CPQQGALVWG DGYYNGAIKT RKTVQPMEVS  60
AEETSLQRSQ QLRELYESLS AEETNQPARR PCAALSPEDL TESEWFYLMS VSFSFPPGIG  120
LPGKALARQQ HVWLTGANEA DSKIFSRAIL AKSAGVQTVV CIPLVDGVVE LGTTERVAED  180
LGLIQHVKSY FIDHQHYPNP AHSEHSTSNP STTSEHPHFN SSRLMAMYSS MQPATNANQG  240
DNEDEDEDDE EDEEEEDGES ESEAGTGQNT HHLSTDDPLH LCNPITQDIA MSQAAAEPSE  300
LMQLEMSEDI RLGSPDDVSN NLESELHMLG LNHSVGQVDF HPRAELTPHR WPLLQDQLCN  360
SLQQPVSDSD QMEELTQEDT HYSQTVSTIL QKTSSKWSES SSISTDCVGY SMQSAFSKWS  420
HRNDRLIRLP SNGTSQWVLK YILFNVPFLH SKYQDENSTK FQDGDNVTRL RKSASQDELS  480
ANHVLAERRR REKLNERFII LRSLVPFVTK MDKASILGDT IEYVKQLRKR IQDLELRTKG  540
VDVDQRTKSV DTTKPSKVKL HGNDGNVAVQ DRVGLVPGSE RRKVRIVEGI GGSKTKVLDP  600
PSVVGNVLQV SIIESDALLE LKCAYREGLL LEIMQTLKEL RMEITAVQSS SANGVFSAEL  660
RAKVKEISSG KKVTIMEVKR VLHQIITQY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-2391919192Transcription factor MYC3
4rqw_B2e-2391919192Transcription factor MYC3
4rs9_A2e-2391919192Transcription factor MYC3
4yz6_A2e-2391919192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1486491ERRRRE
2487492RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255921.10.0PREDICTED: basic helix-loop-helix protein A-like isoform X1
RefseqXP_010255923.10.0PREDICTED: basic helix-loop-helix protein A-like isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A061DRT40.0A0A061DRT4_THECC; BHLH-like DNA binding protein
STRINGVIT_07s0104g00090.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-96bHLH family protein